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Why is Amazon/Flipkart holding back a cut of my payout, what is this TCS?

The short answer

Under Section 52, every marketplace must collect TCS (Tax Collected at Source) on the net value of your sales and deposit it against your GSTIN, the rate is small (0.5% as of now; it was 1% until mid-2024, so verify the current figure with your CA). It is not a cost you lose: it lands in your electronic cash ledger (reflected via GSTR-8/2B) and you set it off against your monthly GST liability. Note that your own website is not a 'marketplace', so no GST TCS is collected on Shopify/gateway sales there.

A quick summary to orient you. The real value is below: the resources worth your time, from people who've actually done it, not us.

Here are the resources

Hand-picked from around the web, each with a note on why it earns your time. India-specific ones carry a badge.

4 resources 4 India-specific 4 link-checked

Read

📄 Article
✓ Link checked India Free Intermediate

Why we picked it Explains TCS under Section 52, what the marketplace deducts, how it hits your ledger and how you reclaim it, so the payout deduction stops being a mystery. Also notes the Nov 2025 simplified-registration change.

GST Registration for Ecommerce Collecting TCS under GST

From ClearTax by ClearTax

  • E-commerce operators collect TCS on net sales value under Section 52
  • Current TCS rate is 0.5% (was 1% until mid-2024, verify)
  • TCS is credited to your cash ledger and offsets GST liability
Open cleartax.in
📄 Article
✓ Link checked India Free Intermediate

Why we picked it A dense, practitioner-written FAQ covering commission handling, invoice generation, ITC and TCS matching, the kind of detail a marketplace seller runs into in month two.

Everything about GST on Online Sellers of Amazon, Flipkart etc.

From TaxAdda by TaxAdda

  • Anyone supplying through an ECO must register regardless of turnover
  • The seller bears GST liability, not the platform
  • Practical guidance on ITC claims and TCS reconciliation
Open taxadda.com
📄 Article
✓ Link checked India Free Beginner

Why we picked it The single best plain-English overview for a D2C founder, it ties together registration, place of supply, invoicing, returns and TCS in one read without drowning you in sections of the Act.

GST on Online Sellers of Amazon, Flipkart and Other Ecommerce

From ClearTax by ClearTax

  • Marketplace sellers must register for GST regardless of turnover
  • GST is destination-based: CGST+SGST intra-state, IGST inter-state
  • The seller, not the platform, issues the tax invoice to the buyer
Open cleartax.in
📄 Article
✓ Link checked India Free Intermediate

Why we picked it Shows the practical loop of pulling marketplace sales reports and reconciling them into your GST returns, including matching the TCS the platform reported against your own numbers.

GST Return Filing for e-Commerce Sellers

From ClearTax by ClearTax

  • Import marketplace sales/credit-note reports to file returns
  • Reconcile platform-reported TCS with your sales
  • Streamlines GSTR-1 and GSTR-3B for multi-channel sellers
Open cleartax.in

People also ask

Do I actually need a GST registration to sell online, or can I start without one? If you sell through any marketplace (Amazon, Flipkart, Meesho, Nykaa, quick-commerce), GST is compulsory from your very first order with no turnove... Beginner 4 resources → A customer in another state ordered, do I charge IGST or CGST + SGST? GST is a destination-based tax, so what matters is the 'place of supply', where the goods are delivered. Ship inside your own state and you charge ... Beginner 4 resources → I store stock in a 3PL or Amazon FBA warehouse in another state, do I need a separate GST registration there? Usually yes. Once your goods physically sit in and are supplied from a warehouse in another state (Amazon FBA, a Meesho/Flipkart hub, a 3PL fulfilm... Advanced 4 resources → What HSN code and GST rate apply to my product, and where do I look it up? Every product maps to an HSN code that fixes which GST slab it falls in (commonly 0 / 5 / 12 / 18 / 28%, slabs and rates get revised periodically, ... Intermediate 3 resources → When do e-invoicing and e-way bills actually kick in for my shipments? An e-way bill is needed whenever a single consignment crosses Rs 50,000 in value, for parcel shipments a courier aggregator like Shiprocket usually... Intermediate 3 resources → Can I claim input tax credit on ad spend, shipping and software, and how does GST work on COD? Yes, the 18% GST on Meta/Google ads, courier bills, packaging, Shopify/SaaS subscriptions and gateway fees is input tax credit you offset against t... Intermediate 3 resources →
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